SCA database

SCAdb: A CANDIDATE GENE DATABASE FOR SPINOCEREBELLAR ATAXIAS (Ensembl version)

Effect of
parameters

Scores: default _{- switch to [user-defined scores]}

Location (weight : )

Exon: , Intron: and Flanking the gene (~250 nt):

Copy number (weight : )

Long: , Short: and Bonus:

Type (weight : )

= trimer (there are 10 classes) =

CAG:	GAA:	CGG:	AAC:	AGG:
ATC:	AAT:	ACC:	ACG:	ACT:

= tetramer (there are 33 classes) =

CCAA:	CAGA:	CAGC:	TAGA:	CAGG:
TAGG:	CAGT:	CAAA:	TAAA:	CAAG:
TAAG:	CCCA:	GAAA:	CAAT:	CGGA:
TGGA:	CGGG:	GGGA:	CGGT:	CACG:
TACG:	CGAA:	TGAA:	CGAG:	CTAA:
TGAG:	TTAA:	CTAG:	GGAA:	CGAT:
CATA:	CATG:	CCGG:

= pentamer (there are 102 classes) =

ATTCT:	CACCT:	CAGGA:	CGATA:	CAGGC:
TTAAA:	CCGCG:	CAGGG:	TTAAG:	CATGC:
CCTCG:	CCGCT:	CAGGT:	CATGT:	CAACC:
CAACG:	CACTA:	CACTC:	CAGAA:	CACTG:
CAGAC:	CAACT:	CAGAG:	CATAA:	CATAC:
CTAGG:	CACTT:	CATAG:	CCGTA:	CGAGA:
GAGAA:	CAGAT:	CGAGG:	CTAGT:	CTTTA:
CATAT:	GGAGA:	CGAGT:	CAATA:	CAATC:
CTAAA:	CAATG:	CACGA:	CTAAG:	CACGC:
TAAAA:	CGAAA:	CCCCG:	CAGCC:	CAATT:
CAGCG:	CGAAG:	CATCC:	CTAAT:	CATCG:
CACGT:	CCGGA:	CAGCT:	CCGGG:	CGAAT:
GGAAA:	CATCT:	CGGGA:	TAGGG:	CACAA:
CACAC:	GGGGA:	CACAG:	CAAGA:	CAAGC:
CAAGG:	CACAT:	CAGTA:	CCGAA:	CAGTC:
CAAGT:	CATTA:	CCGAG:	CCTAA:	CATTC:
CGACG:	CTACT:	CCTAG:	CGGAA:	CAGTT:
TATAA:	CGGAG:	CGTAA:	CATTT:	CCTAT:
CGTAG:	CTTAT:	GGGAA:	CAAAA:	CAAAC:
CAAAG:	CACCC:	CACCG:	CAAAT:	CTATA:
GAAAA:	CCCGA:

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