|
Codon Usage in Ling-Chi
Nucleotide composition in genomic sequences: A (21.8%), T (22.1%), G (27.5%),
C (28.6%)
Nucleotide composition in coding sequences: A (19.7%), T (19.6%), G (29.1%), C (31.6%) # CUSP codon usage file
|
Codon
|
Amino acid
|
Fract
|
/1000
|
Number
|
|
GCA
|
A
|
0.178
|
15.966
|
13,229
|
|
GCC
|
A
|
0.297
|
26.581
|
22,025
|
|
GCG
|
A
|
0.321
|
28.779
|
23,846
|
|
GCT
|
A
|
0.204
|
18.248
|
15,120
|
|
TGC
|
C
|
0.603
|
14.748
|
12,220
|
|
TGT
|
C
|
0.397
|
9.704
|
8,041
|
|
GAC
|
D
|
0.589
|
24.393
|
20,212
|
|
GAT
|
D
|
0.411
|
16.994
|
14,081
|
|
GAA
|
E
|
0.383
|
16.493
|
13,666
|
|
GAG
|
E
|
0.617
|
26.551
|
22,000
|
|
TTC
|
F
|
0.701
|
17.507
|
14,506
|
|
TTT
|
F
|
0.299
|
7.466
|
6,186
|
|
GGA
|
G
|
0.225
|
18.117
|
15,012
|
|
GGC
|
G
|
0.321
|
25.853
|
21,422
|
|
GGG
|
G
|
0.229
|
18.448
|
15,286
|
|
GGT
|
G
|
0.226
|
18.201
|
15,081
|
|
CAC
|
H
|
0.552
|
15.319
|
12,693
|
|
CAT
|
H
|
0.448
|
12.431
|
10,300
|
|
ATA
|
I
|
0.181
|
5.518
|
4,572
|
|
ATC
|
I
|
0.590
|
18.005
|
14,919
|
|
ATT
|
I
|
0.229
|
6.972
|
5,777
|
|
AAA
|
K
|
0.293
|
7.629
|
6,321
|
|
AAG
|
K
|
0.707
|
18.443
|
15,282
|
|
CTA
|
L
|
0.050
|
3.951
|
3,274
|
|
CTC
|
L
|
0.358
|
28.272
|
23,426
|
|
CTG
|
L
|
0.229
|
18.114
|
15,009
|
|
CTT
|
L
|
0.220
|
17.350
|
14,376
|
|
TTA
|
L
|
0.026
|
2.090
|
1,732
|
|
TTG
|
L
|
0.116
|
9.195
|
7,619
|
|
ATG
|
M
|
1.000
|
11.687
|
9,684
|
|
AAC
|
N
|
0.649
|
13.712
|
11,362
|
|
AAT
|
N
|
0.351
|
7.432
|
6,158
|
|
CCA
|
P
|
0.210
|
18.374
|
15,225
|
|
CCC
|
P
|
0.286
|
25.045
|
20,752
|
|
CCG
|
P
|
0.281
|
24.552
|
20,344
|
|
CCT
|
P
|
0.223
|
19.462
|
16,126
|
|
CAA
|
Q
|
0.350
|
10.264
|
8,505
|
|
CAG
|
Q
|
0.650
|
19.043
|
15,779
|
|
AGA
|
R
|
0.105
|
12.289
|
10,183
|
|
AGG
|
R
|
0.133
|
15.637
|
12,957
|
|
CGA
|
R
|
0.173
|
20.305
|
16,825
|
|
CGC
|
R
|
0.254
|
29.803
|
24,695
|
|
CGG
|
R
|
0.171
|
20.030
|
16,597
|
|
CGT
|
R
|
0.164
|
19.286
|
15,980
|
|
AGC
|
S
|
0.187
|
18.069
|
14,972
|
|
AGT
|
S
|
0.110
|
10.696
|
8,863
|
|
TCA
|
S
|
0.100
|
9.718
|
8,052
|
|
TCC
|
S
|
0.226
|
21.897
|
18,144
|
|
TCG
|
S
|
0.235
|
22.710
|
18,817
|
|
TCT
|
S
|
0.142
|
13.732
|
11,378
|
|
ACA
|
T
|
0.160
|
10.296
|
8,531
|
|
ACC
|
T
|
0.338
|
21.710
|
17,989
|
|
ACG
|
T
|
0.316
|
20.292
|
16,814
|
|
ACT
|
T
|
0.185
|
11.903
|
9,863
|
|
GTA
|
V
|
0.152
|
9.216
|
7,636
|
|
GTC
|
V
|
0.407
|
24.659
|
20,432
|
|
GTG
|
V
|
0.228
|
13.832
|
11,461
|
|
GTT
|
V
|
0.212
|
12.851
|
10,648
|
|
TGG
|
W
|
1.000
|
14.656
|
12,144
|
|
TAC
|
Y
|
0.636
|
10.129
|
8,393
|
|
TAT
|
Y
|
0.364
|
5.809
|
4,813
|
¡@
¡@ |
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