Database resource

Download URL

File names

EST/IMAGE clone

Refer PALSdb or CHANGE database

HUGO

http://www.gene.ucl.ac.uk/nomenclature/code/ftpaccess.html

ncbi2.txt

LocusLink

ftp://ftp.ncbi.nih.gov/refseq/LocusLink/

LL_tmpl.gz

MGI (Mouse genome informatics)

ftp://ftp.informatics.jax.org/pub/reports/index.html

gene_association.mgi

MRK_Sequence.rpt

KEGG

ftp://ftp.genome.ad.jp/pub/kegg/pathways/

has : human, mmu : mouse, map : reference pathways

*.gene

*.html

has: 127 pathways (March~April, 2004)

mmu: 117 pathways (March~April, 2004)

BioCarta

http://www.biocarta.com/index.asp

Html files

1.      get pathway lists

2.      retrieve each pathway html

3.      326 pathways

GenMAPP

http://www.genmapp.org/MAPP_lists.html (You should register before download)

GeneTable Hs_GO_Archive.zip (Human)

GO

http://www.geneontology.org/index.shtml#downloads

Molecular Function text file (7288 terms as of February 23, 2004)
Biological Process text file (8337 terms as of February 23, 2004)
Cellular Component text file (1390 terms as of February 23, 2004)
Term Definition text file

OMIM

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM

-OMIM Gene Table

-The OMIM Gene Map (genemap)