Protein domains & families
Definition
- Signatures, motifs, and domains
- Protein families
Methodology
- Pattern presentation
- Patterns
- Position specific scoring matrices (PSSM)
- Profile Hidden Markov Model (profile
HMM)
- Classification
- Based on patterns
- Neural network
Databases
| Name |
Type |
Method |
Comments |
| Prosite |
Pattern presentation |
Pattern & PSSM |
manual |
| blocks |
Pattern presentation |
PSSM |
automatic |
| prints |
Pattern presentation |
PSSM |
manual |
| prodom |
Pattern presentation |
PSSM |
PSI-blast |
| pfam |
Pattern presentation |
HMM |
automatic |
| SMART |
Pattern presentation |
¡@ |
manual |
| iProClass |
Classification |
neural network |
¡@ |
| Sbase |
¡@ |
¡@ |
¡@ |
| MetaFam |
¡@ |
¡@ |
¡@ |
Portal site
¡@ | |
|
