Simulation
Differential equation
- Power law analysis and simulation (PLAS,
http://correio.cc.fc.ul.pt/~aenf/plas.html)
- E-cell (http://www.e-cell.org/)
- E-CELL simulates cell behavior by numerically integrating the
differential equations described implicitly in these reaction rules. By
encapsulating numerical integration methods into object classes, virtually
any integration algorithm can be used for simulation of an E-CELL model.
Furthermore, E-CELL allows the assignment of any numerical integration
algorithm for each compartment of the cell model, facilitating the
optimization of the simulation for the user's purpose (e.g. simulation
accuracy or speed).
Hybrid Petri-net
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